• Name: base R plugins LCB
    Version: 1.01
    Author: Ola Spjuth
    Support: Ola Spjuth
    Last Update: 2016-01-20 10:52:13
    Description: *****************************************
    *  Readme for R-plugins_lcb_v092.tar.gz 
    *  Author: Ola Spjuth, 
    *  The Linnaeus Centre for Bioninformatics,    &nbs
  • Name: LCB plugins
    Version: 2
    Author: Adam Ameur
    Support: Adam Ameur
    Last Update: 2016-01-20 10:56:11
    Description: INSTALLATION

    - Unpack the plugin archive into some <your_temp_location>.

    - Copy the config files in the root of <your_temp_location> to a root of the
    default BASE installation where main php configuration file is located.
    If your installation differs from the default one you will need to make sure
    that the actual plug-ins will find their config files, since relative paths
    have been used within them. It is assumed that [rootDir]/data/jobs/
  • Name: AS-SNP pipeline
    Version: 1.0
    Author: Nicholas Baltzer
    Support: Nicholas Baltzer
    Last Update: 2017-09-07 09:54:31
    Description: The pipeline for creating a database of AS-SNPs, as detailed in Cavalli et al. Creates Excel files of the most relevant SNPs from a given cell line, annotated with their discovered correlations and associations within GWAS, eQTL, and any other data sources available in bed format. [Citation: Cavalli M.*, Baltzer N.*, Umer H. M., Grau J., Lemnian I., Pan G., Wallerman O., Spalinskas R., Sahlen P., Grosse I., Komorowski J., Wadelius C. Allele specific chromatin signals, 3D interactions and refined motif prediction for immune and B cell related diseases]