Cell Reports Medicine 3 has published: Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues

by Administrator

K Diamanti, M Cavalli, MJ Pereira, G Pan, C Castillejo-Lopez, C Kumar, ...(2022). "Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues". Cell Reports Medicine ... Read More

New Member: Research Assistant, Girish Pulinkala

by Administrator

We are happy to announce a new member in our group. Girish Pulinkala is a Research Assistant coming from India [View Profile]... Read More

Jan Komorowski on: "Life Sciences in Silico: Artificial Intelligence and Machine Learning as Tools for New Discoveries�

by Jan Komorowski

A new episode of the SCAS Talks Podcast Series is now available:
Jan Komorowski: "Life Sciences in Silico: Artificial Intelligence and Machine Learning as Tools for New Discoveries"&... Read More

Cancers has published: Machine Learning-Based Analysis of Glioma Grades Reveals Co-Enrichment

by Administrator

M. Garbulowski, K. Smolinska, U. Çabuk, Sara A. Y., L. Celli, E. N. Yaz, F. Barrenäs, K. Diamanti, C. Wadelius and J. Komorowski(2022). "Machine Learning-Based Analysis of Glioma Grades Reveals Co-En... Read More

BMC Bioinformatics has published: R.ROSETTA: an interpretable machine learning framework

by Administrator

Mateusz Garbulowski, Klev Diamanti, Karolina Smolińska, Nicholas Baltzer, Patricia Stoll, Susanne Bornelöv, Aleksander Øhrn, Lars Feuk & Jan Komorowski(2021). "R.ROSETTA: an interpretable machine le... Read More

Frontiers in Genetics has published: Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism Spectrum Disorder

by Administrator

Mateusz Garbulowski, Karolina Smolinska, Klev Diamanti, Gang Pan, Khurram Maqbool, Lars Feuk and Jan Komorowski(2021). "Interpretable Machine Learning Reveals Dissimilarities Between Subtypes of Autism... Read More

Blood Advances has published: Genomic characterization of relapsed acute myeloid leukemia reveals novel putative therapeutic targets

by Administrator

Svea Stratmann , Sara A. Yones , Markus Mayrhofer , Nina Norgren , Aron Skaftason , Jitong Sun , Karolina Smolinska , Jan Komorowski , Morten Krogh Herlin , Christer Sundström , Anna Eriksson , Marti... Read More

New Member: Research Assistant, Gustav Lennemyr Ahlström

by Administrator

We are happy to announce a new member in our group. Gustav Lennemyr Ahlström is a Research Assistant coming from Sweden [View Profile]... Read More

the plant journal has published: Nucleolar rDNA folds into condensed foci with a specific combination of epigenetic marks

by Administrator

Konstantin O. Kutashev, Michal Franek, Klev Diamanti, Jan Komorowski, Marie Olšinová, Martina Dvořá�ková(2020). "Nucleolar rDNA folds into condensed foci with a specific combination of epige... Read More

OMICS: A Journal of Integrative Biology has published: A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver

by Administrator

Marco Cavalli, Klev Diamanti, Gang Pan, Rapolas Spalinskas, Chanchal Kumar, Atul Shahaji Deshmukh, Matthias Mann, Pelin Sahlén, Jan Komorowski, and Claes Wadelius(2020). "A Multi-Omics Approach to Liv... Read More

Two papers in Nature by the Bioinformatics Laboratory

by Umer H. and Diamanti K.

Human Genomics has published: Studies of liver tissue identify functional gene regulatory elements associated to gene expression, type 2 diabetes, and other metabolic diseases

by Administrator

Cavalli M., Baltzer N., Pan G., Bárcenas-Walls J.R., Smolinska-Garbulowska K., Kumar C., Skrtic S., Komorowski J. and Wadelius C.(2019). "Studies of liver tissue identify functional gene regulatory el... Read More

Scientific Reports has published: Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases

by Administrator

Cavalli M., Baltzer N., Umer H.M., Grau J., Lemnian I., Pan G., Wallerman O., Spalinskas R., Sahlén P., Grosse I., Komorowski J. and Wadelius C.(2019). "Allele specific chromatin signals, 3D interacti... Read More

Dr. Michael Gale, Programming immunity against viruses

by Admin

Dr. Michael Gale, Director of the National Center for Innate Immunity and Immune Disease, is an invited speaker at Scielife and also visits our laboratory.  If interested to speak to him, please ... Read More

1.5M SEK SciLifeLab grant to our lab

by Admininistrator

SciLife Laboratory funds a 2 year postdoctoral position for work on machine learning in bioinformatics.... Read More

bioRxiv has published: Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

by Administrator

Rheinbay E., Nielsen M. M., Abascal F., Tiao G., Hornshøj H., Hess J. M., Pedersen R. I., Feuerbach L., Sabarinathan R., Madsen H. T., Kim J., Mularoni L., Shuai S., Camaioni A. S. L., Herrmann... Read More

New Publication: Unveiling new interdependencies between significant DNA methylation sites, gene expression profiles and glioma patients survival

by Administrator

Dabrowski M. J., Draminski M., Diamanti K., Stepniak K., Mozolewska M. A., Teisseyre P., Koronacki J., Komorowski J., Kaminska B. and Wojtas B.(2018). "Unveiling new interdependencies between significa... Read More

Honorary degree for Prof. Jan Komorowski

by Admin

Prof. Komorowski received an honorary title of Kurt Mothes Visiting Professorship at Martin Luther Universität Halle-Wittenberg, Germany, in 2018.... Read More

NIH grant to our lab

by Admin

Our lab has received an NIH award entitled "Transcriptomics of RhCMV/SIV Vector-Vaccinated Macaques". Prof. Jan Komorowski is the PI of the project and Dr. Fredrik Barrenäs is the CO-PI. This is the... Read More

New Member: Past Member, Eirini Skyrla

by Administrator

We are happy to announce a new member in our group. Eirini Skyrla is a Past Member coming from Greece [View Profile]... Read More

New Member: Past Member, Müge Segmen

by Administrator

We are happy to announce a new member in our group. Müge Segmen is a Past Member coming from Turkey [View Profile]... Read More

New Repository: AS-SNP pipeline Version: 1.0, by Nicholas Baltzer

by Administrator

We are happy to announce a repository made by our group. AS-SNP pipeline, version 1.0 by Nicholas Baltzer. [View]... Read More

New Publication: Risk stratification in cervical cancer screening by complete screening history: Applying bioinformatics to a general screening population

by Administrator

Baltzer N., Sundström K., Nygård J. F., Dillner J. and Komorowski J.(2017). "Risk stratification in cervical cancer screening by complete screening history: Applying bioinformatics to a general scree... Read More

New Publication: PiiL: visualization of DNA methylation and gene expression data in gene pathways

by Administrator

Torabi B. M., Zamani N., Komorowski J. and Grabherr M.(2017). "PiiL: visualization of DNA methylation and gene expression data in gene pathways". BMC Genomics 18(1):571-583. [publication link] ... Read More

Participation in IJCRS2017

by Admin

In July Professor Jan Komorowski delivered a keynote talk at the International Joint Conference on Rough Sets (IJCRS 2017).  Klev Diamanti with Mateusz Garbulowski taught a workshop entitled "Roug... Read More

The Komorowski Bioinformatics Laboratory contributes the most cited papers at ICM

by Admin

Our bioinformatics group has contributed the first and the third most cited paper from our Department of Cell and Molecular Biology.  The data has been obtained in connection with the internation... Read More

Keynote talk and Workshop to be given

by Admin

In July Professor Jan Komorowski will deliver a keynote talk at the International Joint Conference on Rough Sets.  And Klev Diamanti with Maetusz Garbulowski will teach there "Rough Sets for Big D... Read More

New project started

by Admin

Professor Jan Komorowski is a recipient of a Symfonia (Polish spelling!) grant from the Polish National Science Centre.  This is a joint project with The Nencki Institute of Experimental Biology ... Read More

The Komorowski lab ski retreat

by Admin

Last week our group enjoyed skiing in Kungsberget.



From left to right: Fredrik Barrenäs, Klev Diamanti, Mateusz Garbulowski, Karolina Smolinska, Sara Yones, Jan Komorowski, Marco Cavalli (Wadelius... Read More

Visit by Ass. Prof. Magdalena Mozolewska

by Admin

Magdalena Mozolewska is Assistant Professor in research group of Prof. Jan Komorowski in Warsaw working in computational chemistry. She is currently visiting ICM and she will give a seminar on Monday ... Read More

Talk in CSHL Systems Biology: Networks

by Admin

We are happy to announce that our abstract entitled "Functional rule networks—A supervised learning approach to creating biological networks" has been accepted for an oral presentation in the annu... Read More

New Publication: Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes

by Administrator

Khaliq Z., Leijon M., Belák S. and Komorowski J.(2016). "Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes". BMC ... Read More

NAR accepted our manuscript

by Klev Diamanti

Our paper "Maps of context-dependent putative regulatory regions and genomic signal interactions" authored by Klev Diamanti, Husen M. Umer, Marcin Kruczyk, Michal J. Dabrowski, Marco Cavalli, Claes Wade... Read More

Discrete Computational Biology course started

by Klev Diamanti

The course Discrete Computational Biology (DCB) has started for the autumn semster of 2016. Best of luck to the students!
Jan, Klev and Nicholas... Read More

New Member: Past Member, Fangming Lan

by Administrator

We are happy to announce a new member in our group. Fangming Lan is a Past Member coming from China [View Profile]... Read More

Our course

by Administrator

The course "Knowledge-based Systems in Bioinformatics" (KBiB) just started. KBiB is a 5 credit points course: 3 points - exam, 1 point - hand-ins and 1 point - project. The lectures will be held by prof... Read More

New Member: Past Member, Susanne Bornelöv

by Administrator

We are happy to announce a new member in our group. Susanne Bornelöv is a Past Member coming from Sweden [View Profile]... Read More

New Publication: Ciruvis: a web-based tool for rule networks and interaction detection using rule-based classifiers

by Administrator

Bornelöv S., Marillet S. and Komorowski J.(2014). "Ciruvis: a web-based tool for rule networks and interaction detection using rule-based classifiers". BMC Bioinformatics 15(0):139. [publication link] ... Read More

PhD Thesis Defense: Rule-based Models of Transcriptional Regulation and Complex Diseases : Applications and Development

by Susanne Bornelöv

Abstract [en]

As we gain increased understanding of genetic disorders and gene regulation more focus has turned towards complex interactions. Combinations of genes or gene and environmental factors h

Prof. Joanna Polanska will give a talk on October the 2nd

by Susanne Bornelöv

My opponent Prof. Joanna Polanska from the Silesian University of Technology will give a talk tomorrow (October 2) at 14:15 in the meeting room at the B7:2 corridor.

Title:DELINEATION OF BRAIN TUMOUR

Book Published

by Klev Diamanti

Comprehensive Biomedical Physics, Anders Brahme, has been published by Elsevier.  It includes a section written by Jan Komorowski: Learning Rule-Based Models – The Rough Set Approach
If you ... Read More

DCB course has started

by Klev Diamanti

The course Discrete Computational Biology (1MB415) has already started since September the 2nd. Parts of this course are also included in the Bioinformatics - starting course. The lectures will be hel... Read More

New Publication: Nucleosome regulatory dynamics in response to TGFβ

by Administrator

Enroth S., Andersson R., Bysani M., Wallerman O., Termén S., Tuch B., De La Vega F., Heldin C.H., Moustakas A., Komorowski J. and Wadelius C.(2014). "Nucleosome regulatory dynamics in response to TGFÎ... Read More

New Publication: Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells

by Administrator

Kruczyk M., Przanowski P., Dabrowski M., Swiatek-Machado K., Mieczkowski J., Wallerman O., Ronowicz A., Piotrowski A., Wadelius C., Kaminska B. and Komorowski J.(2014). "Integration of genome-wide of S... Read More

NIASC grant to fund cancer screening project

by Nicholas Baltzer

The Nordic Institue for Action eSciences organization has provided funding for a project in cancer screening and prevention technology at the Komorowski Research Group. The project will involve collab... Read More

Reviews are in

by Klev Diamanti

Our recent publication (Przanowski P. et al., 2013) got an excellent review recently (Hanisch Uwe-Karsten, 2014).... Read More

New Publication: The signal transducers Stat1 and Stat3 and their novel target Jmjd3 drive the expression of inflammatory genes in microglia

by Administrator

Przanowski P., Dabrowski M., Ellert-Miklaszewska A., Kloss M., Mieczkowski J., Kaza B., Ronowicz A., Hu F., Piotrowski A., Kettenmann H., Komorowski J., Kaminska B.(2014). "The signal transducers Stat1... Read More

PhD Desertation: Marcin Kruczyk

by Administrator

On Friday, October 11, 2013 Marcin Kruczyk is presenting his PhD Thesis entitled: "Rule-based Approaches for Large Biological Datasets Analysis - a Suite of Tools and Methods". The presentation will tak... Read More

Bioinformatics Talk

by Husen Umer

On Friday, October 11th, 2013, Professor Joaquin Dopazo from Computational Genomics Department, Centro de Investigación Príncipe Felipe will an interesting talk to the members and&n... Read More